ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4o64C1 - ECOD Domain | ECOD

ECOD/Domains/e4o64C1

e4o64C1

UID: 001287065

PDB

Range: C:657-723
PDB: 4O64 chain C(all domains)
UniProt: Q8NHM5 (all domains)
Gene: KDM2B

Molecule: Lysine-specific demethylase 2B

3D Structure

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Related Domains

Browse other domains in PHD_4 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD_4(376.1.3.13)

Ligands

in contact, ≤ 4 Å

Unknown atom or ionUNX
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PHD-finger

ClanCL0229RING

External Links

ECOD PDB View: 4O64 RCSB PDB: 4O64 PDBe: 4O64 UniProt: Q8NHM5

Downloads

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