ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cndB1 - ECOD Domain | ECOD

ECOD/Domains/e4cndB1

e4cndB1

UID: 001299393

PDB

Range: B:1-164
PDB: 4CND chain B(all domains)
UniProt: P0AE01 (all domains)
Gene: trmJ

Molecule: TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 4CND RCSB PDB: 4CND PDBe: 4CND UniProt: P0AE01

Downloads

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