ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cnfA1 - ECOD Domain | ECOD

ECOD/Domains/e4cnfA1

e4cnfA1

UID: 001299396

PDB

Range: A:1-157
PDB: 4CNF chain A(all domains)
UniProt: Q4JB16 (all domains)
Gene: trmJ

Molecule: SPOU RRNA METHYLASE

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 4CNF RCSB PDB: 4CNF PDBe: 4CNF UniProt: Q4JB16

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.