ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3d45A2 - ECOD Domain | ECOD

ECOD/Domains/e3d45A2

e3d45A2

UID: 000134075

PDB

Range: A:402-504
PDB: 3D45 chain A(all domains)
UniProt: Q8VDG3 (all domains)
Gene: Parn

Molecule: Poly(A)-specific ribonuclease PARN

3D Structure

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Related Domains

Browse other domains in RNA_bind →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRNA_bind(304.9.1.15)

Ligands

in contact, ≤ 4 Å

7-Methyl-7,8-dihydroguanosine 5'-(dihydrogen phosphate)7MG
drugDrugBank DB04259
Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

Pfam Families

PF08675RNA_bind

RNA binding domain

ClanCL0221RRM

External Links

ECOD PDB View: 3D45 RCSB PDB: 3D45 PDBe: 3D45 UniProt: Q8VDG3

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.