ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dkvA1 - ECOD Domain | ECOD

ECOD/Domains/e3dkvA1

e3dkvA1

UID: 000135149

PDB

Range: A:126-160
PDB: 3DKV chain A(all domains)
UniProt: P16304 (all domains)
Gene: adk

Molecule: Adenylate kinase

3D Structure

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Related Domains

Browse other domains in ADK_lid →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyADK_lid(375.1.1.32)

Ligands

in contact, ≤ 4 Å

Bis(Adenosine)-5'-PentaphosphateAP5
drugDrugBank DB01717
Zinc ionZN
metal
Magnesium ion

Pfam Families

PF05191ADK_lid

Adenylate kinase, active site lid

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 3DKV RCSB PDB: 3DKV PDBe: 3DKV UniProt: P16304

Downloads

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metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.