ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e4hB2 - ECOD Domain | ECOD

ECOD/Domains/e4e4hB2

e4e4hB2

UID: 001391306

PDB

Range: B:181-509
PDB: 4E4H chain B(all domains)
UniProt: Q9H6W3 (all domains)
Gene: RIOX1

Molecule: Lysine-specific demethylase NO66

3D Structure

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Related Domains

Browse other domains in JmjC_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC_2(10.12.1.40)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal

+ 3 additives (Glycerin, Acetate, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
Acetate

Pfam Families

JmjC domain

ClanCL0029Cupin

External Links

ECOD PDB View: 4E4H RCSB PDB: 4E4H PDBe: 4E4H UniProt: Q9H6W3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511within 5 Å only

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.