ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mjfA1 - ECOD Domain | ECOD

ECOD/Domains/e3mjfA1

e3mjfA1

UID: 000139331

PDB

Range: A:104-327
PDB: 3MJF chain A(all domains)
UniProt: Q8ZAR2 (all domains)
Gene: purD

Molecule: Phosphoribosylamine--glycine ligase

3D Structure

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Related Domains

Browse other domains in GARS_A →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyGARS_A(206.1.3.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 5 additives (Triethylene glycol, Sulfate ion, 1,2-ETHANEDIOL, …)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4

Pfam Families

Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3MJF RCSB PDB: 3MJF PDBe: 3MJF UniProt: Q8ZAR2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

GlycerolGOL

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.