ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3no3A1 - ECOD Domain | ECOD

ECOD/Domains/e3no3A1

e3no3A1

UID: 000140029

PDB

Range: A:0-258
PDB: 3NO3 chain A(all domains)
UniProt: A6L916 (all domains)
Gene: BDI_0402

Molecule: glycerophosphodiester phosphodiesterase

3D Structure

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Related Domains

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Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD(2002.1.1.106)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHER

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3NO3 RCSB PDB: 3NO3 PDBe: 3NO3 UniProt: A6L916

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.