ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rg1A1 - ECOD Domain | ECOD

ECOD/Domains/e4rg1A1

e4rg1A1

UID: 001401256

PDB

Range: A:69-181,A:274-374
PDB: 4RG1 chain A(all domains)
UniProt: Q5T280 (all domains)
Gene: SPOUT1

Molecule: C9orf114

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_3(2488.1.1.6)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
(S)-propane-1,2-diolPGO
drugDrugBank DB04349within 5 Å only

Pfam Families

PF02598Methyltrn_RNA_3

Putative RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 4RG1 RCSB PDB: 4RG1 PDBe: 4RG1 UniProt: Q5T280

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

POLYETHYLENE GLYCOL (N=34)15P

Unknown atom or ionUNX

Shown in the structure viewer. Drug annotations from DrugDomain.