ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o0oB3 - ECOD Domain | ECOD

ECOD/Domains/e3o0oB3

e3o0oB3

UID: 001408389

PDB

Range: B:1-132
PDB: 3O0O chain B(all domains)
UniProt: O33839 (all domains)
Gene: nrdJ

Molecule: Ribonucleoside-diphosphate reductase

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_lgN →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRuvA-C(103)

HH-groupATP cone(103.2)

TT-groupATP cone(103.2.1)

FFamilyRibonuc_red_lgN(103.2.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Thymidine 5'-triphosphateTTP
drugDrugBank DB02452within 5 Å only

Pfam Families

PF00317Ribonuc_red_lgN

Ribonucleotide reductase, all-alpha domain

External Links

ECOD PDB View: 3O0O RCSB PDB: 3O0O PDBe: 3O0O UniProt: O33839

Downloads

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CobalaminB12

Shown in the structure viewer. Drug annotations from DrugDomain.