ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zukA1 - ECOD Domain | ECOD

ECOD/Domains/e3zukA1

e3zukA1

UID: 000144074

PDB

Range: A:4-663
PDB: 3ZUK chain A(all domains)
UniProt: O53649 (all domains)
Gene: MT0208

Molecule: ENDOPEPTIDASE, PEPTIDASE FAMILY M13

3D Structure

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Related Domains

Browse other domains in Peptidase_M13,Peptidase_M13_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M13,Peptidase_M13_N(2498.1.1.5)

Ligands

in contact, ≤ 4 Å

Trolamine211
drugDrugBank DB13747
PhosphoramidonRDF
drugDrugBank DB02557

Pfam Families

PF01431Peptidase_M13

Peptidase family M13

ClanCL0126Peptidase_MA

PF05649Peptidase_M13_N

Peptidase family M13

External Links

ECOD PDB View: 3ZUK RCSB PDB: 3ZUK PDBe: 3ZUK UniProt: O53649

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ion

Zinc ionZN

metal

+ 5 additives (Acetate, Triethylene glycol, Sulfate ion, …)

AcetateACT
DrugBank DB14511
Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.