ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qsdA1 - ECOD Domain | ECOD

ECOD/Domains/e3qsdA1

e3qsdA1

UID: 000144148

PDB

Range: A:71-323
PDB: 3QSD chain A(all domains)
UniProt: Q8MNY2 (all domains)
Gene: cb1.1

Molecule: Cathepsin B-like peptidase (C01 family)

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

N-(3-Propylcarbamoyloxirane-2-Carbonyl)-Isoleucyl-Proline074
drugDrugBank DB02855

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 3QSD RCSB PDB: 3QSD PDBe: 3QSD UniProt: Q8MNY2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.