ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3to8A1 - ECOD Domain | ECOD

ECOD/Domains/e3to8A1

e3to8A1

UID: 000148483

PDB

Range: A:380-494
PDB: 3TO8 chain A(all domains)
UniProt: P14866 (all domains)
Gene: HNRNPL

Molecule: Heterogeneous nuclear ribonucleoprotein L

3D Structure

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Related Domains

Browse other domains in RRM_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_5(304.9.1.23)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHER

Pfam Families

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

ClanCL0221RRM

External Links

ECOD PDB View: 3TO8 RCSB PDB: 3TO8 PDBe: 3TO8 UniProt: P14866

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.