ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rxxA1 - ECOD Domain | ECOD

ECOD/Domains/e4rxxA1

e4rxxA1

UID: 001491765

RepresentativePDB

Range: A:1-426
PDB: 4RXX chain A(all domains)
UniProt: Q8NB14 (all domains)
Gene: USP38

Molecule: Ubiquitin carboxyl-terminal hydrolase 38

3D Structure

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Related Domains

Browse other domains in Usp38-like_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyUsp38-like_N(109.4.1.274)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Unknown atom or ionUNX

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF21246Usp38-like_N

Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain

ClanCL0020TPR

External Links

ECOD PDB View: 4RXX RCSB PDB: 4RXX PDBe: 4RXX UniProt: Q8NB14

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.