ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5afiz1 - ECOD Domain | ECOD

ECOD/Domains/e5afiz1

e5afiz1

UID: 001504073

PDB

Range: z:1-40,z:63-201
PDB: 5AFI chain z(all domains)
UniProt: P0CE48 (all domains)
Gene: tufB

Molecule: Elongation factor Tu 2

3D Structure

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Related Domains

Browse other domains in GTP_EFTU, MMR_HSR1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyGTP_EFTU, MMR_HSR1(2004.1.1.414)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
KirromycinKIR
Magnesium ionMG

Pfam Families

PF00009GTP_EFTU

Elongation factor Tu GTP binding domain

ClanCL0023P-loop_NTPase

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5AFI RCSB PDB: 5AFI PDBe: 5AFI UniProt: P0CE48

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.