ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dcmA1 - ECOD Domain | ECOD

ECOD/Domains/e4dcmA1

e4dcmA1

UID: 000151609

PDB

Range: A:179-373
PDB: 4DCM chain A(all domains)
UniProt: P42596 (all domains)
Gene: rlmG

Molecule: Ribosomal RNA large subunit methyltransferase G

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMTS(2003.1.5.46)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Methyltransferase small domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4DCM RCSB PDB: 4DCM PDBe: 4DCM UniProt: P42596

Downloads

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