ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4m4gA1 - ECOD Domain | ECOD

ECOD/Domains/e4m4gA1

e4m4gA1

UID: 001523647

PDB

Range: A:86-165,A:269-324
PDB: 4M4G chain A(all domains)
UniProt: P06614 (all domains)
Gene: cysB

Molecule: HTH-type transcriptional regulator CysB

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

N-Acetyl-SerineSAC
drugDrugBank DB02340

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 4M4G RCSB PDB: 4M4G PDBe: 4M4G UniProt: P06614

Downloads

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