ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4s38A1 - ECOD Domain | ECOD

ECOD/Domains/e4s38A1

e4s38A1

UID: 001549249

PDB

Range: A:4-291
PDB: 4S38 chain A(all domains)
UniProt: Q5SLI8 (all domains)
Gene: ispG

Molecule: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in GcpE →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGcpE(2002.1.1.132)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid, Pentaethylene glycol, …)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

GcpE TIM-barrel domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4S38 RCSB PDB: 4S38 PDBe: 4S38 UniProt: Q5SLI8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pentaethylene glycol

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.