ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wmfB1 - ECOD Domain | ECOD

ECOD/Domains/e4wmfB1

e4wmfB1

UID: 001554343

PDB

Range: B:1-189
PDB: 4WMF chain B(all domains)
UniProt: W6A941 (all domains)

Molecule: MERS-CoV 3CL protease

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (DI(HYDROXYETHYL)ETHER, Tetraethylene glycol)

DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 4WMF RCSB PDB: 4WMF PDBe: 4WMF UniProt: W6A941

Downloads

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