ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ymhB1 - ECOD Domain | ECOD

ECOD/Domains/e4ymhB1

e4ymhB1

UID: 001557483

PDB

Range: B:2-236
PDB: 4YMH chain B(all domains)
UniProt: Q9HGR1 (all domains)
Gene: mth1

Molecule: Putative SAM-dependent O-methyltranferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_3(2003.1.5.14)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01596Methyltransf_3

O-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4YMH RCSB PDB: 4YMH PDBe: 4YMH UniProt: Q9HGR1

Downloads

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