ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pfeA1 - ECOD Domain | ECOD

ECOD/Domains/e3pfeA1

e3pfeA1

UID: 001577174

PDB

Range: A:206-383
PDB: 3PFE chain A(all domains)
UniProt: Q5ZXC3 (all domains)
Gene: dapE

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

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Related Domains

Browse other domains in M20_dimer →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupBacterial exopeptidase dimerisation domain(304.25)

TT-groupBacterial exopeptidase dimerisation domain(304.25.1)

FFamilyM20_dimer(304.25.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF07687M20_dimer

Peptidase dimerisation domain

External Links

ECOD PDB View: 3PFE RCSB PDB: 3PFE PDBe: 3PFE UniProt: Q5ZXC3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.