ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cnlA1 - ECOD Domain | ECOD

ECOD/Domains/e5cnlA1

e5cnlA1

UID: 001674783

PDB

Range: A:0-160
PDB: 5CNL chain A(all domains)
UniProt: Q5ZZ91 (all domains)
Gene: lpg0120

Molecule: IcmL-like

3D Structure

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Related Domains

Browse other domains in T4BSS_DotI_IcmL →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCystatin-like(243)

HH-groupNTF2-like(243.1)

TT-groupNTF2-like(243.1.1)

FFamilyT4BSS_DotI_IcmL(243.1.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Triethylene glycol, Sulfate ion, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHER

Pfam Families

PF11393T4BSS_DotI_IcmL

Type-IV b secretion system, inner-membrane complex component

ClanCL0051NTF2

External Links

ECOD PDB View: 5CNL RCSB PDB: 5CNL PDBe: 5CNL UniProt: Q5ZZ91

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.