ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ca9A1 - ECOD Domain | ECOD

ECOD/Domains/e5ca9A1

e5ca9A1

UID: 001688254

RepresentativePDB

Range: A:26-313
PDB: 5CA9 chain A(all domains)
UniProt: Q9C0L9 (all domains)
Gene: SEY1

Molecule: Protein SEY1

3D Structure

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Related Domains

Browse other domains in RHD3_GTPase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRHD3_GTPase(2004.1.1.133)

Ligands

in contact, ≤ 4 Å

Tetrafluoroaluminate IonALF
drugDrugBank DB04444
Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

Pfam Families

PF05879RHD3_GTPase

Root hair defective 3 GTP-binding protein (RHD3) GTPase domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5CA9 RCSB PDB: 5CA9 PDBe: 5CA9 UniProt: Q9C0L9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.