ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dffB1 - ECOD Domain | ECOD

ECOD/Domains/e5dffB1

e5dffB1

UID: 001694168

PDB

Range: B:43-318
PDB: 5DFF chain B(all domains)
UniProt: P27695 (all domains)
Gene: APEX1

Molecule: DNA-(apurinic or apyrimidinic site) lyase

3D Structure

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Related Domains

Browse other domains in Exo_endo_phos →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupDNase I-like(246.3)

TT-groupDNase I-like(246.3.1)

FFamilyExo_endo_phos(246.3.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF03372Exo_endo_phos

Endonuclease/Exonuclease/phosphatase family

ClanCL0530DNase_I-like

External Links

ECOD PDB View: 5DFF RCSB PDB: 5DFF PDBe: 5DFF UniProt: P27695

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.