ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4wceG1 - ECOD Domain | ECOD

ECOD/Domains/e4wceG1

e4wceG1

UID: 001695010

PDB

Range: G:1-145
PDB: 4WCE chain G(all domains)
UniProt: Q2FW38 (all domains)
Gene: rplM

Molecule: 50S ribosomal protein L13

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal protein L13 and L16-A(2490.2)

TT-groupRibosomal protein L13 and L16-A(2490.2.1)

FFamilyRibosomal_L13(2490.2.1.1)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566within 5 Å only
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

PF00572Ribosomal_L13

Ribosomal protein L13

External Links

ECOD PDB View: 4WCE RCSB PDB: 4WCE PDBe: 4WCE UniProt: Q2FW38

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.