ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wfbC1 - ECOD Domain | ECOD

ECOD/Domains/e4wfbC1

e4wfbC1

UID: 001695091

PDB

Range: C:3-201
PDB: 4WFB chain C(all domains)
UniProt: Q2FW07 (all domains)
Gene: rplD

Molecule: 50S ribosomal protein L4

3D Structure

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Related Domains

Browse other domains in Ribosomal_L4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L4(7559)

HH-groupRibosomal protein L4(7559.1)

TT-groupRibosomal protein L4(7559.1.1)

FFamilyRibosomal_L4(7559.1.1.1)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566
Magnesium ionMG
metal
MANGANESE (II) IONMN

Pfam Families

PF00573Ribosomal_L4

Ribosomal protein L4/L1 family

External Links

ECOD PDB View: 4WFB RCSB PDB: 4WFB PDBe: 4WFB UniProt: Q2FW07

Downloads

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metal

+ 1 additive (Ethanol)

EthanolEOH

Shown in the structure viewer. Drug annotations from DrugDomain.