ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4zybB1 - ECOD Domain | ECOD

ECOD/Domains/e4zybB1

e4zybB1

UID: 001695230

PDB

Range: B:185-316
PDB: 4ZYB chain B(all domains)
UniProt: O33599 (all domains)
Gene: lytM

Molecule: Glycyl-glycine endopeptidase LytM

3D Structure

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Related Domains

Browse other domains in Peptidase_M23 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupDuplicated hybrid motif(325.1.6)

FFamilyPeptidase_M23(325.1.6.2)

Ligands

in contact, ≤ 4 Å

tetraglycine phosphinate4SQ
Calcium ionCA
metal
Chloride ionCL

Pfam Families

PF01551Peptidase_M23

Peptidase family M23

ClanCL0105Hybrid

External Links

ECOD PDB View: 4ZYB RCSB PDB: 4ZYB PDBe: 4ZYB UniProt: O33599

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

Unknown ligandUNL

within 5 Å only

+ 3 additives (HEPES, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

HEPESEPE
DrugBank DB16872
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.