ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ctmB1 - ECOD Domain | ECOD

ECOD/Domains/e5ctmB1

e5ctmB1

UID: 001713797

PDB

Range: B:59-95,B:193-290
PDB: 5CTM chain B(all domains)
UniProt: A8FFI9 (all domains)
Gene: BPUM_2340

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (1,2-ETHANEDIOL, Citrate anion, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
Citrate anionFLC
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5CTM RCSB PDB: 5CTM PDBe: 5CTM UniProt: A8FFI9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.