ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5faiA1 - ECOD Domain | ECOD

ECOD/Domains/e5faiA1

e5faiA1

UID: 001726384

PDB

Range: A:36-244
PDB: 5FAI chain A(all domains)
UniProt: Q92979 (all domains)
Gene: EMG1

Molecule: Ribosomal RNA small subunit methyltransferase NEP1

3D Structure

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Related Domains

Browse other domains in EMG1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyEMG1(2488.1.1.7)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Unknown atom or ionUNX

+ 1 additive (Citric acid)

Citric acid

Pfam Families

EMG1/NEP1 methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 5FAI RCSB PDB: 5FAI PDBe: 5FAI UniProt: Q92979

Downloads

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DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.