ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ca8A2 - ECOD Domain | ECOD

ECOD/Domains/e5ca8A2

e5ca8A2

UID: 001758295

PDB

Range: A:27-313
PDB: 5CA8 chain A(all domains)
UniProt: Q9C0L9 (all domains)
Gene: SEY1

Molecule: Protein SEY1

3D Structure

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Related Domains

Browse other domains in RHD3_GTPase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRHD3_GTPase(2004.1.1.133)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05879RHD3_GTPase

Root hair defective 3 GTP-binding protein (RHD3) GTPase domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5CA8 RCSB PDB: 5CA8 PDBe: 5CA8 UniProt: Q9C0L9

Downloads

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