ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yb6E1 - ECOD Domain | ECOD

ECOD/Domains/e4yb6E1

e4yb6E1

UID: 001787746

PDB

Range: E:103-191
PDB: 4YB6 chain E(all domains)
UniProt: Q5HSJ4 (all domains)
Gene: hisG

Molecule: ATP phosphoribosyltransferase

3D Structure

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Related Domains

Browse other domains in HisG →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyHisG(7523.1.1.10)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (DI(HYDROXYETHYL)ETHER)

Pfam Families

ATP phosphoribosyltransferase

ClanCL0177PBP

External Links

ECOD PDB View: 4YB6 RCSB PDB: 4YB6 PDBe: 4YB6 UniProt: Q5HSJ4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.