ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5czbA1 - ECOD Domain | ECOD

ECOD/Domains/e5czbA1

e5czbA1

UID: 001841885

PDB

Range: A:358-562
PDB: 5CZB chain A(all domains)
UniProt: O92972 (all domains)

Molecule: NS5B

3D Structure

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Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_3(4967.1.1.5)

Ligands

in contact, ≤ 4 Å

1-[4-(7-amino-5-methylpyrazolo[1,5-a]pyrimidin-2-yl)phenyl]-3-{[(R)-(2,4-dimethylphenyl)(methoxy)phosphoryl]amino}-1H-pyrazole-4-carboxylic acid55W

+ 4 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid, DI(HYDROXYETHYL)ETHER, …)

GlycerinGOL
DrugBank DB09462

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 5CZB RCSB PDB: 5CZB PDBe: 5CZB UniProt: O92972

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(N-morpholino)ethanesulfonic acid

DrugBank DB03814

DI(HYDROXYETHYL)ETHERPEG

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.