ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jknA1 - ECOD Domain | ECOD

ECOD/Domains/e5jknA1

e5jknA1

UID: 001851185

RepresentativePDB

Range: A:111-369
PDB: 5JKN chain A(all domains)
UniProt: Q8N5J2 (all domains)
Gene: MINDY1

Molecule: Protein FAM63A

3D Structure

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Related Domains

Browse other domains in MINDY_DUB →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyMINDY_DUB(219.1.1.23)

Ligands

in contact, ≤ 4 Å

MERCURY (II) IONHG
metal

+ 2 additives (Phosphate ion, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523
DI(HYDROXYETHYL)ETHER

Pfam Families

PF04424MINDY_DUB

MINDY deubiquitinase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 5JKN RCSB PDB: 5JKN PDBe: 5JKN UniProt: Q8N5J2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.