ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j88DT1 - ECOD Domain | ECOD

ECOD/Domains/e5j88DT1

e5j88DT1

UID: 001859944

PDB

Range: DT:1-110
PDB: 5J88 chain DT(all domains)
UniProt: P61175 (all domains)
Gene: rplV

Molecule: 50S ribosomal protein L22

3D Structure

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Related Domains

Browse other domains in Ribosomal_L22 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupEnolase-N/ribosomal protein(218)

HH-groupRibosomal protein L22(218.2)

TT-groupRibosomal protein L22(218.2.1)

FFamilyRibosomal_L22(218.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives ((4r)-2-Methylpentane-2,4-Diol, Triethylene glycol, Pentaethylene glycol, …)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF00237Ribosomal_L22

Ribosomal protein L22p/L17e

External Links

ECOD PDB View: 5J88 RCSB PDB: 5J88 PDBe: 5J88 UniProt: P61175

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pentaethylene glycol

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.