ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jjsA2 - ECOD Domain | ECOD

ECOD/Domains/e5jjsA2

e5jjsA2

UID: 001860317

PDB

Range: A:263-700
PDB: 5JJS chain A(all domains)
UniProt: Q6DLV0 (all domains)

Molecule: Genome polyprotein

3D Structure

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Related Domains

Browse other domains in Flavi_NS5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyFlavi_NS5(304.48.1.13)

Ligands

in contact, ≤ 4 Å

5-[5-(3-hydroxyprop-1-yn-1-yl)thiophen-2-yl]-2,4-dimethoxy-N-{[(1R,3R)-3-methoxycyclohexyl]sulfonyl}benzamide6L2
Magnesium ionMG
metal
Zinc ionZN

Pfam Families

PF00972Flavi_NS5

Flavivirus RNA-directed RNA polymerase, fingers and palm domains

ClanCL0027RdRP

External Links

ECOD PDB View: 5JJS RCSB PDB: 5JJS PDBe: 5JJS UniProt: Q6DLV0

Downloads

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metal

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.