ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k1nA1 - ECOD Domain | ECOD

ECOD/Domains/e5k1nA1

e5k1nA1

UID: 001867244

PDB

Range: A:10-124
PDB: 5K1N chain A(all domains)
UniProt: P02766 (all domains)
Gene: TTR

Molecule: Transthyretin

3D Structure

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Related Domains

Browse other domains in Transthyretin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilyTransthyretin(11.1.4.1)

Ligands

in contact, ≤ 4 Å

RheniumRE
metal

+ 3 additives (Acetate, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOL

Pfam Families

PF00576Transthyretin

HIUase/Transthyretin family

ClanCL0287Transthyretin

External Links

ECOD PDB View: 5K1N RCSB PDB: 5K1N PDBe: 5K1N UniProt: P02766

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.