ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kcoA1 - ECOD Domain | ECOD

ECOD/Domains/e5kcoA1

e5kcoA1

UID: 001868763

PDB

Range: A:347-401
PDB: 5KCO chain A(all domains)
UniProt: Q15047 (all domains)
Gene: SETDB1

Molecule: Histone-lysine N-methyltransferase SETDB1

3D Structure

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Related Domains

Browse other domains in Tudor_4 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyTudor_4(4.1.1.128)

Ligands

in contact, ≤ 4 Å

~{N}-(4-chlorophenyl)methanesulfonamide6RO
Unknown atom or ionUNX

+ 2 additives (Sulfate ion, Dimethyl sulfoxide)

Sulfate ionSO4

Pfam Families

PF18358Tudor_4

Histone methyltransferase Tudor domain

ClanCL0010SH3

External Links

ECOD PDB View: 5KCO RCSB PDB: 5KCO PDBe: 5KCO UniProt: Q15047

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.