ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kh3A1 - ECOD Domain | ECOD

ECOD/Domains/e5kh3A1

e5kh3A1

UID: 001868776

PDB

Range: A:1108-1208
PDB: 5KH3 chain A(all domains)
UniProt: Q9UBN7 (all domains)
Gene: HDAC6

Molecule: Histone deacetylase 6

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-UBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Ligands

in contact, ≤ 4 Å

3-(5-chloranyl-1,3-benzothiazol-2-yl)propanoic acid6U6
Unknown atom or ionUNX
Zinc ionZN

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

ECOD PDB View: 5KH3 RCSB PDB: 5KH3 PDBe: 5KH3 UniProt: Q9UBN7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.