ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j5bD11 - ECOD Domain | ECOD

ECOD/Domains/e5j5bD11

e5j5bD11

UID: 001869038

PDB

Range: D1:2-57
PDB: 5J5B chain D1(all domains)
UniProt: P0A7N4 (all domains)
Gene: rpmF

Molecule: 50S ribosomal protein L32

3D Structure

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Related Domains

Browse other domains in Ribosomal_L32p →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L32p(375.1.1.14)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF01783Ribosomal_L32p

Ribosomal L32p protein family

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5J5B RCSB PDB: 5J5B PDBe: 5J5B UniProt: P0A7N4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.