ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d8fA1 - ECOD Domain | ECOD

ECOD/Domains/e5d8fA1

e5d8fA1

UID: 001871408

PDB

Range: A:4-109
PDB: 5D8F chain A(all domains)
UniProt: Q9BQ15 (all domains)
Gene: NABP2

Molecule: SOSS complex subunit B1

3D Structure

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Related Domains

Browse other domains in Ssb-like_OB →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilySsb-like_OB(2.1.1.111)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21473OB_Ssb-like

Single-stranded DNA binding protein Ssb-like, OB fold

ClanCL0021OB

External Links

ECOD PDB View: 5D8F RCSB PDB: 5D8F PDBe: 5D8F UniProt: Q9BQ15

Downloads

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