ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3pfeA2 - ECOD Domain | ECOD

ECOD/Domains/e3pfeA2

e3pfeA2

UID: 001874350

PDB

Range: A:0-205,A:384-470
PDB: 3PFE chain A(all domains)
UniProt: Q5ZXC3 (all domains)
Gene: dapE

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M20 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M20(2011.1.1.6)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

+ 3 additives (Imidazole, Glycerol, DI(HYDROXYETHYL)ETHER)

ImidazoleIMD

Pfam Families

PF01546Peptidase_M20

Peptidase family M20/M25/M40

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 3PFE RCSB PDB: 3PFE PDBe: 3PFE UniProt: Q5ZXC3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03366

GlycerolGOL

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.