ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hm3A1 - ECOD Domain | ECOD

ECOD/Domains/e5hm3A1

e5hm3A1

UID: 001877483

PDB

Range: A:2-5,A:11-181
PDB: 5HM3 chain A(all domains)
UniProt: O53580 (all domains)
Gene: fadD32

Molecule: Long-chain-fatty-acid--AMP ligase FadD32

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding(323.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 5HM3 RCSB PDB: 5HM3 PDBe: 5HM3 UniProt: O53580

Downloads

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