ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kh6A3 - ECOD Domain | ECOD

ECOD/Domains/e5kh6A3

e5kh6A3

UID: 001887049

PDB

Range: A:251-346
PDB: 5KH6 chain A(all domains)
UniProt: Q15047 (all domains)
Gene: SETDB1

Molecule: Histone-lysine N-methyltransferase SETDB1

3D Structure

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Related Domains

Browse other domains in Tudor_5 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyTudor_5(4.1.1.129)

Ligands

in contact, ≤ 4 Å

methyl 3-(methylsulfonylamino)benzoate6SU
Chloride ionCL

+ 5 additives (Dimethyl sulfoxide, Glycerin, Sulfate ion, …)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

PF18359Tudor_5

Histone methyltransferase Tudor domain 1

ClanCL0010SH3

External Links

ECOD PDB View: 5KH6 RCSB PDB: 5KH6 PDBe: 5KH6 UniProt: Q15047

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.