ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ksoA1 - ECOD Domain | ECOD

ECOD/Domains/e5ksoA1

e5ksoA1

UID: 001887111

PDB

Range: A:415-580
PDB: 5KSO chain A(all domains)
UniProt: Q8IXI2 (all domains)
Gene: RHOT1

Molecule: Mitochondrial Rho GTPase 1

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5KSO RCSB PDB: 5KSO PDBe: 5KSO UniProt: Q8IXI2

Downloads

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Drug annotations from DrugDomain.