ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sytA1 - ECOD Domain | ECOD

ECOD/Domains/e5sytA1

e5sytA1

UID: 001893658

PDB

Range: A:10-474
PDB: 5SYT chain A(all domains)
UniProt: O75844 (all domains)
Gene: ZMPSTE24

Molecule: CAAX prenyl protease 1 homolog

3D Structure

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Related Domains

Browse other domains in Peptidase_M48,Peptidase_M48_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M48,Peptidase_M48_N(2498.1.1.11)

Ligands

in contact, ≤ 4 Å

Pentaethylene glycol monodecyl etherCXE
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEPC1
Zinc ionZN

Pfam Families

PF01435Peptidase_M48

Peptidase family M48

ClanCL0126Peptidase_MA

PF16491Peptidase_M48_N

CAAX prenyl protease N-terminal, five membrane helices

External Links

ECOD PDB View: 5SYT RCSB PDB: 5SYT PDBe: 5SYT UniProt: O75844

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 5 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, Dimethyl sulfoxide, Glycerin, …)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233
Dimethyl sulfoxideDMS
DrugBank DB01093
GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.