ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m53A1 - ECOD Domain | ECOD

ECOD/Domains/e5m53A1

e5m53A1

UID: 001918392

PDB

Range: A:7-271
PDB: 5M53 chain A(all domains)
UniProt: P51955 (all domains)
Gene: NEK2

Molecule: Serine/threonine-protein kinase Nek2

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

3-[[6-(cyclohexylmethoxy)-7~{H}-purin-2-yl]amino]-~{N},~{N}-dimethyl-benzamide7GJ

+ 3 additives (Phosphate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523
1,2-ETHANEDIOL

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 5M53 RCSB PDB: 5M53 PDBe: 5M53 UniProt: P51955

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.