ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5g3wC1 - ECOD Domain | ECOD

ECOD/Domains/e5g3wC1

e5g3wC1

UID: 001921762

PDB

Range: C:2-369
PDB: 5G3W chain C(all domains)
UniProt: Q70I53 (all domains)
Gene: hdaH

Molecule: HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

(2E)-N-hydroxy-3-{4-[(E)-phenyldiazenyl]phenyl}prop-2-enamideC65
Potassium ionK
metal
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 5G3W RCSB PDB: 5G3W PDBe: 5G3W UniProt: Q70I53

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Pentaethylene glycol, DI(HYDROXYETHYL)ETHER)

Pentaethylene glycol1PE
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.