ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2r8rA1 - ECOD Domain | ECOD

ECOD/Domains/e2r8rA1

e2r8rA1

UID: 000196523

RepresentativePDB

Range: A:0-208
PDB: 2R8R chain A(all domains)
UniProt: Q883V3 (all domains)
Gene: kdpD

Molecule: Sensor protein

3D Structure

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Related Domains

Browse other domains in KdpD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyKdpD(2004.1.1.92)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHER

Pfam Families

Osmosensitive K+ channel His kinase sensor domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2R8R RCSB PDB: 2R8R PDBe: 2R8R UniProt: Q883V3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.