ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2aodA1 - ECOD Domain | ECOD

ECOD/Domains/e2aodA1

e2aodA1

UID: 000020331

PDB

Range: A:1-99
PDB: 2AOD chain A(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: HIV-1 PROTEASE

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide2NC
Unknown atom or ionUNX

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2AOD RCSB PDB: 2AOD PDBe: 2AOD UniProt: P04587

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.