ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5b5mAA1 - ECOD Domain | ECOD

ECOD/Domains/e5b5mAA1

e5b5mAA1

UID: 002046485

PDB

Range: AA:2-61
PDB: 5B5M chain AA(all domains)
UniProt: D2Z0P2 (all domains)
Gene: pufA

Molecule: LH1 alpha polypeptide

3D Structure

Loading viewer...

Related Domains

Browse other domains in LHC →

Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
SpirilloxanthinCRT
Strontium ionSR

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 5B5M RCSB PDB: 5B5M PDBe: 5B5M UniProt: D2Z0P2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.